HL_8P2H_054

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8P2H|1|A|G|2277

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_054 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0912

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8P2H|1|A|C|2275
8P2H|1|A|U|2276
8P2H|1|A|G|2277
8P2H|1|A|OMG|2278
8P2H|1|A|G|2279
8P2H|1|A|G|2280
8P2H|1|A|C|2281
8P2H|1|A|G|2282
8P2H|1|A|G|2283

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27