HL_8P2H_057

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_057 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1273

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

8P2H|1|A|U|2351
8P2H|1|A|G|2352
8P2H|1|A|U|2353
8P2H|1|A|A|2354
8P2H|1|A|A|2355
8P2H|1|A|A|2356
8P2H|1|A|G|2357
8P2H|1|A|G|2358

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L5

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27