HL_8P2H_075

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_075 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.1317

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8P2H|1|D|G|53
8P2H|1|D|U|54
8P2H|1|D|U|55
8P2H|1|D|C|56
8P2H|1|D|A|57
8P2H|1|D|A|58
8P2H|1|D|A|59
8P2H|1|D|U|60
8P2H|1|D|C|61

Current chains

Chain D

tRNA

Nearby chains