HL_8P2H_096

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_096 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2618

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8P2H|1|a|A|1021
8P2H|1|a|G|1022
8P2H|1|a|A|1023
8P2H|1|a|G|1024
8P2H|1|a|A|1025
8P2H|1|a|U|1026

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S14 type Z

Chain t

30S ribosomal protein S19