HL_8P2H_112

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_112 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2748

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P2H|1|A|G|2331
8P2H|1|A|U|2332
8P2H|1|A|U|2333
8P2H|1|A|G|2334
8P2H|1|A|G|2335
8P2H|1|A|A|2336
8P2H|1|A|A|2337
8P2H|1|A|A|2338
8P2H|1|A|U|2339

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L5