HL_8P2K_003

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8P2K|1|A2|A|158, 8P2K|1|A2|U|160, 8P2K|1|A2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1443

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8P2K|1|A2|G|156
8P2K|1|A2|U|157
8P2K|1|A2|A|158
8P2K|1|A2|A2M|159
8P2K|1|A2|U|160
8P2K|1|A2|U|161
8P2K|1|A2|C|162

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24