HL_8P2K_013

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

8P2K|1|A2|U|574

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2346

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|A|570
8P2K|1|A2|C|571
8P2K|1|A2|U|572
8P2K|1|A2|PSU|573
8P2K|1|A2|U|574
8P2K|1|A2|A|575
8P2K|1|A2|A|576
8P2K|1|A2|A2M|577
8P2K|1|A2|U|578
8P2K|1|A2|C|579
8P2K|1|A2|C|580
8P2K|1|A2|U|581
8P2K|1|A2|U|582

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24