HL_8P2K_016

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

8P2K|1|A2|G|837

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_016 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.3461

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8P2K|1|A2|C|835
8P2K|1|A2|C|836
8P2K|1|A2|G|837
8P2K|1|A2|A|838
8P2K|1|A2|G|839

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24