HL_8P2K_031

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8P2K|1|A2|U|1622, 8P2K|1|A2|U|1623, 8P2K|1|A2|A|1624

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|A2|G|1614
8P2K|1|A2|A|1615
8P2K|1|A2|U|1616
8P2K|1|A2|U|1617
8P2K|1|A2|G|1618
8P2K|1|A2|C|1619
8P2K|1|A2|A|1620
8P2K|1|A2|A|1621
8P2K|1|A2|U|1622
8P2K|1|A2|U|1623
8P2K|1|A2|A|1624
8P2K|1|A2|U|1625
8P2K|1|A2|PSU|1626
8P2K|1|A2|C|1627

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AG

40S ribosomal protein S29

Chain Ao

40S ribosomal protein uS19

Chain Ar

40S ribosomal protein S18

Chain As

40S ribosomal protein S19