HL_8P2K_036

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUAACACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_036 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.0995

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8P2K|1|AT|C|31
8P2K|1|AT|C|32
8P2K|1|AT|U|33
8P2K|1|AT|A|34
8P2K|1|AT|A|35
8P2K|1|AT|C|36
8P2K|1|AT|A|37
8P2K|1|AT|C|38
8P2K|1|AT|G|39

Current chains

Chain AT

P-site Val-tRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ao

40S ribosomal protein uS19

Chain Ap

uS9