HL_8P2K_037
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)(PSU)CGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P2K_037 not in the Motif Atlas
- Homologous match to HL_1B23_003
- Geometric discrepancy: 0.1308
- The information below is about HL_1B23_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8P2K|1|AT|G|53
8P2K|1|AT|5MU|54
8P2K|1|AT|PSU|55
8P2K|1|AT|C|56
8P2K|1|AT|G|57
8P2K|1|AT|A|58
8P2K|1|AT|A|59
8P2K|1|AT|A|60
8P2K|1|AT|C|61
Current chains
- Chain AT
- P-site Val-tRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- 60S ribosomal protein L11
- Chain Bo
- eL42
Coloring options: