HL_8P2K_052

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

8P2K|1|B5|U|1070, 8P2K|1|B5|C|1071, 8P2K|1|B5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_052 not in the Motif Atlas

Geometric match to HL_8SP9_002

Geometric discrepancy: 0.3915

The information below is about HL_8SP9_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8P2K|1|B5|G|1069
8P2K|1|B5|U|1070
8P2K|1|B5|C|1071
8P2K|1|B5|C|1072
8P2K|1|B5|C|1073
8P2K|1|B5|C|1074

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

Chain BI

60S ribosomal protein L10