HL_8P2K_069

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_069 not in the Motif Atlas

Homologous match to HL_5TBW_030

Geometric discrepancy: 0.0898

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P2K|1|B5|C|2160
8P2K|1|B5|G|2161
8P2K|1|B5|C|2162
8P2K|1|B5|G|2163
8P2K|1|B5|G|2164
8P2K|1|B5|G|2165

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Be

Ribosomal protein L32

Chain Br

60S ribosomal protein L28