HL_8P2K_075

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8P2K|1|B5|U|2373, 8P2K|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_075 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1352

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|G|2366
8P2K|1|B5|U|2367
8P2K|1|B5|U|2368
8P2K|1|B5|C|2369
8P2K|1|B5|A|2370
8P2K|1|B5|G|2371
8P2K|1|B5|A|2372
8P2K|1|B5|U|2373
8P2K|1|B5|C|2374
8P2K|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BX

Ribosomal_L23eN domain-containing protein

Chain Bg

60S ribosomal protein L34