HL_8P2K_080

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8P2K|1|B5|C|2552

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_080 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2986

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8P2K|1|B5|G|2548
8P2K|1|B5|G|2549
8P2K|1|B5|U|2550
8P2K|1|B5|U|2551
8P2K|1|B5|C|2552
8P2K|1|B5|C|2553

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain BX

Ribosomal_L23eN domain-containing protein

Chain MA

Methionine aminopeptidase 1

Chain Nb

Transcription factor BTF3