HL_8P2K_089

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_089 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2623

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P2K|1|B5|G|3454
8P2K|1|B5|A|3455
8P2K|1|B5|A2M|3456
8P2K|1|B5|G|3457
8P2K|1|B5|A|3458
8P2K|1|B5|A|3459
8P2K|1|B5|A|3460
8P2K|1|B5|U|3461
8P2K|1|B5|PSU|3462
8P2K|1|B5|C|3463

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bi

60S ribosomal protein L36

Chain Bo

eL42

Chain Bv

Ribosomal protein uL1