HL_8P2K_094

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8P2K|1|B5|G|3941

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_094 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8P2K|1|B5|C|3939
8P2K|1|B5|U|3940
8P2K|1|B5|G|3941
8P2K|1|B5|OMG|3942
8P2K|1|B5|G|3943
8P2K|1|B5|G|3944
8P2K|1|B5|C|3945
8P2K|1|B5|G|3946
8P2K|1|B5|G|3947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29