HL_8P2K_096

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_096 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1893

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P2K|1|B5|G|3996
8P2K|1|B5|A|3997
8P2K|1|B5|C|3998
8P2K|1|B5|A|3999
8P2K|1|B5|G|4000
8P2K|1|B5|A|4001
8P2K|1|B5|A|4002
8P2K|1|B5|A|4003
8P2K|1|B5|C|4004

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BJ

60S ribosomal protein L11