HL_8P2K_103

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_103 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.3134

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P2K|1|B5|U|4243
8P2K|1|B5|OMU|4244
8P2K|1|B5|OMG|4245
8P2K|1|B5|PSU|4246
8P2K|1|B5|U|4247
8P2K|1|B5|C|4248
8P2K|1|B5|A|4249

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3