HL_8P2K_107

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8P2K|1|B5|G|4440

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_107 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1697

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|C|4434
8P2K|1|B5|PSU|4435
8P2K|1|B5|G|4436
8P2K|1|B5|A|4437
8P2K|1|B5|A|4438
8P2K|1|B5|C|4439
8P2K|1|B5|G|4440
8P2K|1|B5|C|4441
8P2K|1|B5|C|4442
8P2K|1|B5|U|4443
8P2K|1|B5|C|4444
8P2K|1|B5|U|4445
8P2K|1|B5|A|4446
8P2K|1|B5|A|4447
8P2K|1|B5|G|4448

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin-60S ribosomal protein L40