HL_8P2K_109

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8P2K|1|B5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_109 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1024

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P2K|1|B5|G|4714
8P2K|1|B5|U|4715
8P2K|1|B5|A|4716
8P2K|1|B5|G|4717
8P2K|1|B5|A|4718
8P2K|1|B5|C|4719
8P2K|1|B5|G|4720
8P2K|1|B5|A|4721
8P2K|1|B5|C|4722

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22