HL_8P2K_110

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8P2K|1|B5|C|4763, 8P2K|1|B5|U|4765, 8P2K|1|B5|C|4766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_110 not in the Motif Atlas

Homologous match to HL_8C3A_072

Geometric discrepancy: 0.5614

The information below is about HL_8C3A_072

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8P2K|1|B5|C|4760
8P2K|1|B5|U|4761
8P2K|1|B5|C|4762
8P2K|1|B5|C|4763
8P2K|1|B5|C|4764
8P2K|1|B5|U|4765
8P2K|1|B5|C|4766
8P2K|1|B5|G|4767

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BU

60S ribosomal protein L22