HL_8P2K_130

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8P2K|1|B5|A|4649, 8P2K|1|B5|A|4650, 8P2K|1|B5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_130 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.2189

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|C|4645
8P2K|1|B5|G|4646
8P2K|1|B5|G|4647
8P2K|1|B5|A|4648
8P2K|1|B5|A|4649
8P2K|1|B5|A|4650
8P2K|1|B5|G|4651
8P2K|1|B5|G|4652
8P2K|1|B5|G|4653
8P2K|1|B5|G|4654

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

60S ribosomal protein L13a