HL_8P2K_132

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8P2K|1|A2|U|1301, 8P2K|1|A2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_132 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.1648

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8P2K|1|A2|A|1296
8P2K|1|A2|U|1297
8P2K|1|A2|U|1298
8P2K|1|A2|G|1299
8P2K|1|A2|A|1300
8P2K|1|A2|U|1301
8P2K|1|A2|A|1302
8P2K|1|A2|G|1303
8P2K|1|A2|C|1304
8P2K|1|A2|U|1305

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Ao

40S ribosomal protein uS19