HL_8P85_088

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

8P85|1|A|U|705, 8P85|1|A|U|718, 8P85|1|A|U|719, 8P85|1|A|U|721, 8P85|1|A|U|728, 8P85|1|A|G|729, 8P85|1|A|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|A|G|703
8P85|1|A|C|704
8P85|1|A|U|705
8P85|1|A|A|706
8P85|1|A|A|707
8P85|1|A|C|708
8P85|1|A|C|709
8P85|1|A|U|710
8P85|1|A|U|711
8P85|1|A|G|712
8P85|1|A|A|713
8P85|1|A|G|714
8P85|1|A|U|715
8P85|1|A|C|716
8P85|1|A|C|717
8P85|1|A|U|718
8P85|1|A|U|719
8P85|1|A|G|720
8P85|1|A|U|721
8P85|1|A|G|722
8P85|1|A|G|723
8P85|1|A|C|724
8P85|1|A|U|725
8P85|1|A|C|726
8P85|1|A|U|727
8P85|1|A|U|728
8P85|1|A|G|729
8P85|1|A|G|730
8P85|1|A|C|731
8P85|1|A|G|732
8P85|1|A|A|733
8P85|1|A|A|734
8P85|1|A|C|735

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A