HL_8P85_102

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8P85|1|A|U|1362, 8P85|1|A|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_102 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2993

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8P85|1|A|C|1359
8P85|1|A|A|1360
8P85|1|A|U|1361
8P85|1|A|U|1362
8P85|1|A|U|1363
8P85|1|A|G|1364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A