HL_8P85_113

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8P85|1|AR|U|210, 8P85|1|AR|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_113 not in the Motif Atlas

Geometric match to HL_8P9A_118

Geometric discrepancy: 0.0282

The information below is about HL_8P9A_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8P85|1|AR|C|208
8P85|1|AR|A|209
8P85|1|AR|U|210
8P85|1|AR|A|211
8P85|1|AR|G|212

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DA

60S ribosomal protein L26-A