HL_8P85_203

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_203 not in the Motif Atlas

Geometric match to HL_8P9A_236

Geometric discrepancy: 0.0339

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.4

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P85|1|sR|A|829
8P85|1|sR|U|830
8P85|1|sR|U|831
8P85|1|sR|U|832
8P85|1|sR|U|833
8P85|1|sR|G|834
8P85|1|sR|U|835
8P85|1|sR|U|836
8P85|1|sR|G|837
8P85|1|sR|G|838
8P85|1|sR|U|839
8P85|1|sR|U|840
8P85|1|sR|U|841
8P85|1|sR|C|842
8P85|1|sR|U|843

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A