HL_8P85_204

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_204 not in the Motif Atlas

Geometric match to HL_8P9A_209

Geometric discrepancy: 0.0496

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8P85|1|sR|A|900
8P85|1|sR|G|901
8P85|1|sR|G|902
8P85|1|sR|U|903
8P85|1|sR|G|904
8P85|1|sR|A|905
8P85|1|sR|A|906
8P85|1|sR|A|907
8P85|1|sR|U|908
8P85|1|sR|U|909

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B