HL_8P8M_005

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8P8M|1|A|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0957

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8P8M|1|A|U|194
8P8M|1|A|U|195
8P8M|1|A|G|196
8P8M|1|A|G|197
8P8M|1|A|A|198
8P8M|1|A|A|199
8P8M|1|A|C|200
8P8M|1|A|A|201

Current chains

Chain A

25S rRNA

Nearby chains

Chain QY

60S ribosomal protein L26-A

Chain RE

60S ribosomal protein L32