HL_8P8M_025

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8P8M|1|A|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_025 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0935

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8M|1|A|G|1126
8P8M|1|A|G|1127
8P8M|1|A|U|1128
8P8M|1|A|A|1129
8P8M|1|A|A|1130
8P8M|1|A|G|1131
8P8M|1|A|C|1132

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10