HL_8P8M_031

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8P8M|1|A|G|1507, 8P8M|1|A|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_031 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1095

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8P8M|1|A|A|1506
8P8M|1|A|G|1507
8P8M|1|A|C|1508
8P8M|1|A|A|1509
8P8M|1|A|G|1510
8P8M|1|A|U|1511
8P8M|1|A|U|1512

Current chains

Chain A

25S rRNA

Nearby chains

Chain QO

60S ribosomal protein L17-A

Chain QQ

60S ribosomal protein L19-A