HL_8P8M_047

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_047 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1118

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8M|1|A|A|2220
8P8M|1|A|G|2221
8P8M|1|A|A|2222
8P8M|1|A|A|2223
8P8M|1|A|A|2224
8P8M|1|A|U|2225

Current chains

Chain A

25S rRNA

Nearby chains

Chain RI

60S ribosomal protein L36-A

Chain RQ

60S ribosomal protein L42-A