HL_8P8M_058

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_058 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.077

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8M|1|A|U|2744
8P8M|1|A|G|2745
8P8M|1|A|A|2746
8P8M|1|A|A|2747
8P8M|1|A|A|2748
8P8M|1|A|G|2749

Current chains

Chain A

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L5

Chain QT

60S ribosomal protein L21-A