HL_8P8M_077
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P8M_077 not in the Motif Atlas
- Homologous match to HL_8P9A_186
- Geometric discrepancy: 0.1662
- The information below is about HL_8P9A_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8P8M|1|LD|C|47
8P8M|1|LD|A|48
8P8M|1|LD|G|49
8P8M|1|LD|C|50
8P8M|1|LD|G|51
8P8M|1|LD|A|52
8P8M|1|LD|A|53
8P8M|1|LD|A|54
8P8M|1|LD|U|55
8P8M|1|LD|G|56
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain QX
- 60S ribosomal protein L25
- Chain RH
- 60S ribosomal protein L35-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: