HL_8P8M_078

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUCCCGUCCGAUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_078 not in the Motif Atlas

Homologous match to HL_8P9A_183

Geometric discrepancy: 0.1216

The information below is about HL_8P9A_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01182.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8P8M|1|LE|U|32
8P8M|1|LE|U|33
8P8M|1|LE|C|34
8P8M|1|LE|C|35
8P8M|1|LE|C|36
8P8M|1|LE|G|37
8P8M|1|LE|U|38
8P8M|1|LE|C|39
8P8M|1|LE|C|40
8P8M|1|LE|G|41
8P8M|1|LE|A|42
8P8M|1|LE|U|43
8P8M|1|LE|C|44
8P8M|1|LE|A|45

Current chains

Chain LE

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L5

Chain LO

60S ribosomal protein L11-A