HL_8P8M_079

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

8P8M|1|A|C|1762

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_079 not in the Motif Atlas

Homologous match to HL_8CRE_038

Geometric discrepancy: 0.5867

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8P8M|1|A|A|1760
8P8M|1|A|C|1761
8P8M|1|A|C|1762
8P8M|1|A|U|1763
8P8M|1|A|U|1764
8P8M|1|A|U|1765

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A