HL_8P8N_010

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0632

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8N|1|A|A|357
8P8N|1|A|G|358
8P8N|1|A|U|359
8P8N|1|A|G|360
8P8N|1|A|A|361
8P8N|1|A|U|362

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein eL39

Chain LH

60S ribosomal protein L4-A

Chain RJ

60S ribosomal protein L37-A