HL_8P8N_013

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_013 not in the Motif Atlas

Homologous match to HL_5TBW_013

Geometric discrepancy: 0.1581

The information below is about HL_5TBW_013

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P8N|1|A|C|599
8P8N|1|A|G|600
8P8N|1|A|U|601
8P8N|1|A|A|602
8P8N|1|A|A|603
8P8N|1|A|G|604

Current chains

Chain A

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L4-A

Chain LK

60S ribosomal protein L7-A