HL_8P8N_034

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8P8N|1|A|U|1606, 8P8N|1|A|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_034 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1013

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|G|1599
8P8N|1|A|U|1600
8P8N|1|A|U|1601
8P8N|1|A|A|1602
8P8N|1|A|A|1603
8P8N|1|A|G|1604
8P8N|1|A|A|1605
8P8N|1|A|U|1606
8P8N|1|A|U|1607
8P8N|1|A|C|1608

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A

Chain QX

60S ribosomal protein L25

Chain RG

60S ribosomal protein L34-A