HL_8P8N_053

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8P8N|1|A|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_053 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0893

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8P8N|1|A|C|2616
8P8N|1|A|U|2617
8P8N|1|A|G|2618
8P8N|1|A|G|2619
8P8N|1|A|G|2620
8P8N|1|A|G|2621
8P8N|1|A|C|2622
8P8N|1|A|G|2623
8P8N|1|A|G|2624

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10

Chain RB

60S ribosomal protein L29