HL_8P8N_064

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_064 not in the Motif Atlas

Geometric match to HL_7RQB_064

Geometric discrepancy: 0.0643

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8P8N|1|A|C|3025
8P8N|1|A|G|3026
8P8N|1|A|A|3027
8P8N|1|A|G|3028
8P8N|1|A|A|3029
8P8N|1|A|G|3030

Current chains

Chain A

25S rRNA

Nearby chains

Chain LM

60S ribosomal protein L9-A

Chain RO

Ubiquitin-60S ribosomal protein L40