HL_8P8N_068

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_068 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.1035

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8P8N|1|A|C|3240
8P8N|1|A|G|3241
8P8N|1|A|G|3242
8P8N|1|A|A|3243
8P8N|1|A|A|3244
8P8N|1|A|A|3245
8P8N|1|A|G|3246
8P8N|1|A|G|3247

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LG

60S ribosomal protein L3