HL_8P8N_069

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8P8N|1|A|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_069 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0662

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8P8N|1|A|G|3303
8P8N|1|A|U|3304
8P8N|1|A|A|3305
8P8N|1|A|U|3306
8P8N|1|A|A|3307
8P8N|1|A|C|3308
8P8N|1|A|G|3309
8P8N|1|A|A|3310
8P8N|1|A|C|3311

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QO

60S ribosomal protein L17-A