HL_8P8U_039

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8P8U|1|A|C|1793, 8P8U|1|A|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_039 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1223

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8P8U|1|A|C|1792
8P8U|1|A|C|1793
8P8U|1|A|G|1794
8P8U|1|A|U|1795
8P8U|1|A|G|1796

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain RT

60S ribosomal protein L43-A