HL_8P8U_065

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8P8U|1|A|G|3116, 8P8U|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_065 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0641

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8P8U|1|A|C|3110
8P8U|1|A|U|3111
8P8U|1|A|G|3112
8P8U|1|A|A|3113
8P8U|1|A|A|3114
8P8U|1|A|C|3115
8P8U|1|A|G|3116
8P8U|1|A|C|3117
8P8U|1|A|C|3118
8P8U|1|A|U|3119
8P8U|1|A|C|3120
8P8U|1|A|U|3121
8P8U|1|A|A|3122
8P8U|1|A|A|3123
8P8U|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LM

60S ribosomal protein L9-A

Chain RO

Ubiquitin-60S ribosomal protein L40