HL_8P8U_078

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

8P8U|1|A|C|1762, 8P8U|1|A|U|1763, 8P8U|1|A|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8U_078 not in the Motif Atlas

Homologous match to HL_8CRE_038

Geometric discrepancy: 0.5488

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8P8U|1|A|A|1760
8P8U|1|A|C|1761
8P8U|1|A|C|1762
8P8U|1|A|U|1763
8P8U|1|A|U|1764
8P8U|1|A|U|1765

Current chains

Chain A

25S rRNA

Nearby chains

Chain QQ

60S ribosomal protein L19-A