HL_8PEG_026

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

8PEG|1|7|U|958, 8PEG|1|7|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PEG_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0895

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PEG|1|7|G|954
8PEG|1|7|PSU|955
8PEG|1|7|G|956
8PEG|1|7|C|957
8PEG|1|7|U|958
8PEG|1|7|A|959
8PEG|1|7|A|960
8PEG|1|7|C|961
8PEG|1|7|G|962
8PEG|1|7|U|963

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 8

5S ribosomal RNA; 5S rRNA

Chain h

50S ribosomal protein L16