HL_8PEG_079

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PEG_079 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1749

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PEG|1|A|A|320
8PEG|1|A|A|321
8PEG|1|A|C|322
8PEG|1|A|U|323
8PEG|1|A|G|324
8PEG|1|A|A|325
8PEG|1|A|G|326
8PEG|1|A|A|327
8PEG|1|A|C|328
8PEG|1|A|A|329
8PEG|1|A|C|330
8PEG|1|A|G|331
8PEG|1|A|G|332
8PEG|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20