HL_8PEG_098

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8PEG|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PEG_098 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3149

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8PEG|1|A|U|1165
8PEG|1|A|G|1166
8PEG|1|A|A|1167
8PEG|1|A|U|1168
8PEG|1|A|A|1169
8PEG|1|A|A|1170
8PEG|1|A|A|1171

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain U

30S ribosomal protein S21

Chain Z

30S ribosomal protein S1